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Avian Influenza Virus Is Adapting to Spread to Marine Mammals

Findings Raise Concerns About Wildlife Conservation and Ecosystem Health

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Dead elephant seals lie, appearing as gray boulders, on a beach
Elephant seals lie dead on a beach in Argentina following an outbreak of avian influenza in the region. (Maxi Jonas)

The highly pathogenic avian influenza virus H5N1 has adapted to spread between birds and marine mammals, posing an immediate threat to wildlife conservation, according to a study from the University of California, Davis, and the National Institute of Agricultural Technology (INTA) in Argentina.

, published in the journal Emerging Infectious Diseases, is the first genomic characterization of H5N1 in marine wildlife on the Atlantic shore of South America.

For the study, scientists collected brain samples from four sea lions, one fur seal and a tern found dead at the most affected sea lion rookery in Argentina. All tested positive for H5N1.

Genome sequencing revealed that the virus was nearly identical in each of the samples. The samples shared the same mammal adaptation mutations that were previously detected in a few sea lions in Peru and Chile, and in a human case in Chile. Of note, the scientists found all these mutations also in the tern, the first such finding.

鈥淭his confirms that while the virus may have adapted to marine mammals, it still has the ability to infect birds,鈥 said first author Agustina Rimondi, a virologist from INTA. 鈥淚t is a multi-species outbreak.鈥

three terns stand on rock in Patagonia
Terns are among the hundreds of thousands of birds recently impacted by avian influenza. (Getty)
sea lions nap on rocks by ocean with cormorants nearby in Argentina
Sea lions nap alongside cormorants in Argentina.  (Getty)

We know this because the virus sequence in the tern retained all mammal-adaptation mutations. Such mutations suggest a potential for transmission between marine mammals.

鈥淭his virus is still relatively low risk for humans,鈥 said senior author Marcela Uhart, a wildlife veterinarian with the 嘿嘿视频 School of Veterinary Medicine鈥檚 One Health Institute and director of its Latin America Program within the Karen C. Drayer Wildlife Health Institute. 鈥淎s long as the virus continues to replicate in mammals, it may make it a higher concern for humans. That鈥檚 why it鈥檚 so important to conduct surveillance and provide early warning.鈥

The journey of H5N1

Uhart calls clade 2.3.4.4b 鈥 the current variant of H5N1 鈥 鈥渢his new monster.鈥 It emerged in 2020, while the human world was reeling from a different pandemic, COVID-19. Avian influenza began killing tens of thousands of sea birds in Europe before moving to South Africa. In 2022, it entered the U.S. and Canada, threatening poultry and wild birds. It migrated to Peru and Chile in late 2022.

Then, almost exactly a year ago, in February 2023, highly pathogenic avian influenza entered Argentina for the first time. But it was not until August 2023 鈥 when the virus was first found in sea lions at the tip of South America on the Atlantic coastline of Tierra del Fuego 鈥 that the virus unleashed its fatal potential in the region. From there, it moved swiftly northward, with deadly results, first for marine mammals and later for seabirds.

A recent paper Uhart co-authored showed a large outbreak killed 70% of elephant seal pups born in the 2023 breeding season. Mortality rates reached at least 96% by early November 2023 in the surveyed areas of Pen铆nsula Vald茅s in Argentina.

many dead elephant seals lie on beach Argentina, victims of bird flu outbreak
Dead elephant seals line a beach in Argentina in fall 2023. Avian influenza has caused the catastrophic die-off of thousands of elephant seals in Argentina, raising concerns for wildlife and cross-species transmission. (Ralph Vanstreels/嘿嘿视频)

鈥淲hen it first came to Argentina, we didn鈥檛 know if it would affect elephant seals,鈥 Uhart said. 鈥淲e never imagined the magnitude of what was to come.鈥

Since 2022, H5N1 in South America has killed at least 600,000 wild birds and 50,000 mammals, including elephant seals and sea lions in Argentina, Chile and Peru, and thousands of albatrosses in the Malvinas/Falkland Islands.

Moving south

The virus is now heading southward from South America, and scientists are deeply concerned about its potential impact on penguins and other wildlife in Antarctica.

Uhart and Ralph Vanstreels, her colleague at 嘿嘿视频鈥 Latin America Program in the School of Veterinary Medicine, are conducting wildlife surveillance for H5N1 in Antarctica this month.

鈥淲e need to keep an eye on the ability of this virus to reach species that have never been exposed to an H5N1 infection before,鈥 Rimondi said. 鈥淭he consequences in those species can be very severe.鈥

The concept of One Health honors the interconnectivity among humans, domestic animals, wildlife and the environment. Interspecies disease outbreaks are unsettling examples of such connections and require global collaboration among public, wildlife, agricultural, health and other sectors.

鈥淲e are trying to be at the forefront of documenting, recording and providing early warning,鈥 Uhart said. 鈥淲e鈥檝e been in this area for 30 years. We know these species. We work with scientists who have 30 years of data on these populations, so we can know what will be important for the future. We have to give voice to these poor creatures. Nobody鈥檚 taking note of how big this is.鈥

Media Resources

Media Contact:

  • Kat Kerlin, 嘿嘿视频 News and Media Relations, 530-750-9195, kekerlin@ucdavis.edu

First author Agustina Rimondi is based in Germany, and senior author Marcela Uhart is currently in Antarctica. Please account for time zone differences for both authors and potential inaccessibility for Uhart when requesting media interviews, which Kerlin can help coordinate. Both authors speak English and Spanish.

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